- recipe bioconductor-interest
Intron-Exon Retention Estimator
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/IntEREst.html
- License:
GPL-2
- Recipe:
- Links:
This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).
- package bioconductor-interest¶
-
- Versions:
1.22.2-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.22.2-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.4.1-0
,1.2.2-1
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-deseq2
>=1.38.0,<1.39.0
bioconductor-dexseq
>=1.44.0,<1.45.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-seqlogo
>=1.64.0,<1.65.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-interest
and update with:
conda update bioconductor-interest
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-interest:<tag>
(see bioconductor-interest/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-interest/README.html)