- recipe bioconductor-interminer
R Interface with InterMine-Powered Databases
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/InterMineR.html
- License:
LGPL
- Recipe:
Databases based on the InterMine platform such as FlyMine, modMine (modENCODE), RatMine, YeastMine, HumanMine and TargetMine are integrated databases of genomic, expression and protein data for various organisms. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge. This R package provides interfaces with these databases through webservices. It makes most from the correspondence of the data frame object in R and the table object in databases, while hiding the details of data exchange through XML or JSON.
- package bioconductor-interminer¶
-
- Versions:
1.20.0-0
,1.16.0-0
,1.14.1-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.1-0
,1.4.1-0
,1.20.0-0
,1.16.0-0
,1.14.1-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.1-0
,1.4.1-0
,1.2.1-0
,1.0.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-interminer
and update with:
conda update bioconductor-interminer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-interminer:<tag>
(see bioconductor-interminer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-interminer/README.html)