recipe bioconductor-interminer

R Interface with InterMine-Powered Databases

Homepage

https://bioconductor.org/packages/3.11/bioc/html/InterMineR.html

License

LGPL

Recipe

/bioconductor-interminer/meta.yaml

Databases based on the InterMine platform such as FlyMine, modMine (modENCODE), RatMine, YeastMine, HumanMine and TargetMine are integrated databases of genomic, expression and protein data for various organisms. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge. This R package provides interfaces with these databases through webservices. It makes most from the correspondence of the data frame object in R and the table object in databases, while hiding the details of data exchange through XML or JSON.

package bioconductor-interminer

Versions

1.10.0-0,  1.8.0-0,  1.6.1-0,  1.4.1-0,  1.2.1-0,  1.0.0-0

Depends

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-httr

• r-igraph

• r-rcurl

• r-rjsonio

• r-sqldf

• r-xml

• r-xml2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-interminer

and update with:

conda update bioconductor-interminer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-interminer:<tag>

(see bioconductor-interminer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interminer/README.html)