recipe bioconductor-intramirexplorer

Predicting Targets for Drosophila Intragenic miRNAs

Homepage

https://bioconductor.org/packages/3.12/bioc/html/IntramiRExploreR.html

License

GPL-2

Recipe

/bioconductor-intramirexplorer/meta.yaml

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

package bioconductor-intramirexplorer

Versions

1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0

Depends

• bioconductor-fgnet >=3.23.0,<3.24.0

• r-base >=4.0,<4.1.0a0

• r-igraph >=1.0.1

• r-knitr >=1.12.3

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-intramirexplorer

and update with:

conda update bioconductor-intramirexplorer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-intramirexplorer:<tag>

(see bioconductor-intramirexplorer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-intramirexplorer/README.html)