recipe bioconductor-ioniser

Quality Assessment Tools for Oxford Nanopore MinION data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/IONiseR.html

License

MIT + file LICENSE

Recipe

/bioconductor-ioniser/meta.yaml

Links

biotools: ioniser, doi: 10.1038/nmeth.3252

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

package bioconductor-ioniser

Versions

2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.0-1,  2.6.0-0,  2.4.0-0,  2.2.0-0

Depends

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-rhdf5 >=2.34.0,<2.35.0

• bioconductor-shortread >=1.48.0,<1.49.0

• bioconductor-xvector >=0.30.0,<0.31.0

• r-base >=4.0,<4.1.0a0

• r-bit64

• r-dplyr

• r-ggplot2

• r-magrittr

• r-stringr

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ioniser

and update with:

conda update bioconductor-ioniser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ioniser:<tag>

(see bioconductor-ioniser/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ioniser/README.html)