recipe bioconductor-ioniser

Quality Assessment Tools for Oxford Nanopore MinION data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/IONiseR.html

License

MIT + file LICENSE

Recipe

/bioconductor-ioniser/meta.yaml

Links

biotools: ioniser, doi: 10.1038/nmeth.3252

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

package bioconductor-ioniser

Versions

2.18.0-0,  2.16.0-0,  2.14.0-1,  2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.0-1,  2.6.0-0,  2.4.0-0, 

2.18.0-0,  2.16.0-0,  2.14.0-1,  2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.0-1,  2.6.0-0,  2.4.0-0,  2.2.0-0

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-rhdf5 >=2.38.0,<2.39.0

• bioconductor-shortread >=1.52.0,<1.53.0

• bioconductor-xvector >=0.34.0,<0.35.0

• r-base >=4.1,<4.2.0a0

• r-bit64

• r-dplyr

• r-ggplot2

• r-magrittr

• r-stringr

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ioniser

and update with:

conda update bioconductor-ioniser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ioniser:<tag>

(see bioconductor-ioniser/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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