recipe bioconductor-ioniser

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/IONiseR.html

License

MIT + file LICENSE

Recipe

/bioconductor-ioniser/meta.yaml

Links

biotools: ioniser, doi: 10.1038/nmeth.3252

package bioconductor-ioniser

(downloads) docker_bioconductor-ioniser

Versions

2.6.0-0, 2.4.0-0, 2.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ioniser

and update with:

conda update bioconductor-ioniser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ioniser:<tag>

(see bioconductor-ioniser/tags for valid values for <tag>)