- recipe bioconductor-ioniser
Quality Assessment Tools for Oxford Nanopore MinION data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/IONiseR.html
- License:
MIT + file LICENSE
- Recipe:
- Links:
biotools: ioniser, doi: 10.1038/nmeth.3252
IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.
- package bioconductor-ioniser¶
-
- Versions:
2.18.0-0
,2.16.0-0
,2.14.0-1
,2.14.0-0
,2.12.0-0
,2.10.0-0
,2.8.0-1
,2.6.0-0
,2.4.0-0
,2.18.0-0
,2.16.0-0
,2.14.0-1
,2.14.0-0
,2.12.0-0
,2.10.0-0
,2.8.0-1
,2.6.0-0
,2.4.0-0
,2.2.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
bioconductor-shortread
>=1.52.0,<1.53.0
bioconductor-xvector
>=0.34.0,<0.35.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ioniser
and update with:
conda update bioconductor-ioniser
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ioniser:<tag>
(see bioconductor-ioniser/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ioniser/README.html)