recipe bioconductor-ipddb

IPD IMGT/HLA and IPD KIR database for Homo sapiens

Homepage

https://bioconductor.org/packages/3.10/bioc/html/ipdDb.html

License

Artistic-2.0

Recipe

/bioconductor-ipddb/meta.yaml

All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

package bioconductor-ipddb

Versions

1.4.0-0, 1.2.0-1, 1.0.0-0

Depends

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-annotationhub >=2.18.0,<2.19.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• r-assertthat

• r-base >=3.6,<3.7.0a0

• r-dbi

• r-rsqlite

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ipddb

and update with:

conda update bioconductor-ipddb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ipddb:<tag>

(see bioconductor-ipddb/tags for valid values for <tag>)

Link to this page

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