recipe bioconductor-ipddb

All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ipdDb.html

License

Artistic-2.0

Recipe

/bioconductor-ipddb/meta.yaml

package bioconductor-ipddb

Versions

1.0.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-annotationhub >=2.14.0,<2.15.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• r-assertthat

• r-base >=3.5.1,<3.5.2.0a0

• r-dbi

• r-rsqlite

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ipddb

and update with:

conda update bioconductor-ipddb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ipddb:<tag>

(see bioconductor-ipddb/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ipddb/README.html)