recipe bioconductor-isocorrector

Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/IsoCorrectoR.html

License:

GPL-3

Recipe:

/bioconductor-isocorrector/meta.yaml

IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O…), as well as ultra-high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously). See the Bioconductor package IsoCorrectoRGUI for a graphical user interface to IsoCorrectoR. NOTE: With R version 4.0.0, writing correction results to Excel files may currently not work on Windows. However, writing results to csv works as before.

package bioconductor-isocorrector

Versions:

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0, 

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.5-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-magrittr

• r-pracma

• r-quadprog

• r-readr

• r-readxl

• r-stringr

• r-tibble

• r-writexls

Required By:

• bioconductor-isocorrectorgui

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-isocorrector

and update with:

conda update bioconductor-isocorrector

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-isocorrector:<tag>

(see bioconductor-isocorrector/tags for valid values for <tag>)

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