recipe bioconductor-isocorrector

Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments

Homepage

https://bioconductor.org/packages/3.11/bioc/html/IsoCorrectoR.html

License

GPL-3

Recipe

/bioconductor-isocorrector/meta.yaml

IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O…), as well as high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously). See the Bioconductor package IsoCorrectoRGUI for a graphical user interface to IsoCorrectoR.

package bioconductor-isocorrector

Versions

1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.5-0

Depends

• r-base >=4.0,<4.1.0a0

• r-dplyr

• r-magrittr

• r-pracma

• r-quadprog

• r-readr

• r-readxl

• r-stringr

• r-tibble

• r-writexls

Required By

• bioconductor-isocorrectorgui

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-isocorrector

and update with:

conda update bioconductor-isocorrector

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-isocorrector:<tag>

(see bioconductor-isocorrector/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-isocorrector/README.html)