- recipe bioconductor-iwtomics
Interval-Wise Testing for Omics Data
Implementation of the Interval-Wise Testing (IWT) for omics data. This inferential procedure tests for differences in "Omics" data between two groups of genomic regions (or between a group of genomic regions and a reference center of symmetry), and does not require fixing location and scale at the outset.
- package bioconductor-iwtomics¶
- depends bioconductor-genomicranges:
- depends bioconductor-iranges:
- depends bioconductor-s4vectors:
- depends r-base:
- depends r-fda:
- depends r-gtable:
- depends r-kernsmooth:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-iwtomics and update with:: mamba update bioconductor-iwtomics
To create a new environment, run:
mamba create --name myenvname bioconductor-iwtomics
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-iwtomics:<tag> (see `bioconductor-iwtomics/tags`_ for valid values for ``<tag>``)