- recipe bioconductor-karyoploter
Plot customizable linear genomes displaying arbitrary data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/karyoploteR.html
- License:
Artistic-2.0
- Recipe:
karyoploteR creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. It mimicks many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates. In addition to the provided data plotting functions, it is easy to add new ones.
- package bioconductor-karyoploter¶
-
- Versions:
1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.4-0
,1.8.5-0
- Depends:
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-bamsignals
>=1.26.0,<1.27.0
bioconductor-biovizbase
>=1.42.0,<1.43.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-regioner
>=1.26.0,<1.27.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-karyoploter
and update with:
conda update bioconductor-karyoploter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-karyoploter:<tag>
(see bioconductor-karyoploter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-karyoploter/README.html)