recipe bioconductor-kegggraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/KEGGgraph.html

License:

GPL (>= 2)

Recipe:

/bioconductor-kegggraph/meta.yaml

Links:

biotools: kegggraph

KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.

package bioconductor-kegggraph

Versions:

1.58.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.42.0-0, 

1.58.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.42.0-0,  1.40.0-0,  1.38.1-0,  1.38.0-0,  1.30.0-0,  1.28.0-0

Depends:

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-rgraphviz >=2.42.0,<2.43.0

• r-base >=4.2,<4.3.0a0

• r-rcurl

• r-xml >=2.3-0

Required By:

• bioconductor-rontotools

• bioconductor-mwastools

• bioconductor-enrichmentbrowser

• bioconductor-pfp

• bioconductor-ncigraph

• bioconductor-kegglincs

• bioconductor-clipper

• bioconductor-degraph

• bioconductor-metabosignal

• bioconductor-spia

• bioconductor-pathview

• r-metaboanalyst

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-kegggraph

and update with:

conda update bioconductor-kegggraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-kegggraph:<tag>

(see bioconductor-kegggraph/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-kegggraph/README.html)