KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.
|License||GPL (>= 2)|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-kegggraph
and update with:
conda update bioconductor-kegggraph
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-kegggraph.