- recipe bioconductor-kegggraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/KEGGgraph.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: kegggraph
KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.
- package bioconductor-kegggraph¶
-
- Versions:
1.58.0-0
,1.54.0-0
,1.52.0-0
,1.50.0-1
,1.50.0-0
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.42.0-0
,1.58.0-0
,1.54.0-0
,1.52.0-0
,1.50.0-1
,1.50.0-0
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.42.0-0
,1.40.0-0
,1.38.1-0
,1.38.0-0
,1.30.0-0
,1.28.0-0
- Depends:
bioconductor-graph
>=1.76.0,<1.77.0
bioconductor-rgraphviz
>=2.42.0,<2.43.0
r-base
>=4.2,<4.3.0a0
r-xml
>=2.3-0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-kegggraph
and update with:
conda update bioconductor-kegggraph
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-kegggraph:<tag>
(see bioconductor-kegggraph/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-kegggraph/README.html)