recipe bioconductor-keggrest

A package that provides a client interface to the KEGG REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/KEGGREST.html

License

Artistic-2.0

Recipe

/bioconductor-keggrest/meta.yaml

Links

biotools: keggrest, doi: 10.1007/s11845-015-1283-8

package bioconductor-keggrest

Versions

1.22.0-0, 1.20.2-0, 1.18.0-0, 1.16.1-0, 1.14.1-0, 1.12.3-0, 1.10.1-0

Depends

• bioconductor-biostrings >=2.50.0,<2.51.0

• r-base >=3.5.1,<3.5.2.0a0

• r-httr

• r-png

Required By

• bioconductor-rontotools

• bioconductor-enrichmentbrowser

• bioconductor-gage

• bioconductor-cner

• bioconductor-hiiragi2013

• bioconductor-mwastools

• bioconductor-kegglincs

• bioconductor-mmnet

• bioconductor-fella

• bioconductor-metabosignal

• bioconductor-keggprofile

• bioconductor-pathview

• bioconductor-papi

• bioconductor-pathwaysplice

• bioconductor-rnaseqsamplesize

• bioconductor-starbiotrek

• bioconductor-attract

• bioconductor-yapsa

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-keggrest

and update with:

conda update bioconductor-keggrest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-keggrest:<tag>

(see bioconductor-keggrest/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-keggrest/README.html)