recipe bioconductor-keggrest

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Homepage

https://bioconductor.org/packages/3.13/bioc/html/KEGGREST.html

License

Artistic-2.0

Recipe

/bioconductor-keggrest/meta.yaml

Links

biotools: keggrest, doi: 10.1007/s11845-015-1283-8

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

package bioconductor-keggrest

Versions

1.32.0-0,  1.30.1-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.2-0,  1.18.0-0, 

1.32.0-0,  1.30.1-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.2-0,  1.18.0-0,  1.16.1-0,  1.14.1-0,  1.12.3-0,  1.10.1-0

Depends

• bioconductor-biostrings >=2.60.0,<2.61.0

• r-base >=4.1,<4.2.0a0

• r-httr

• r-png

Required By

• bioconductor-annotationdbi

• bioconductor-sbgnview

• bioconductor-cner

• bioconductor-padog

• bioconductor-metabosignal

• bioconductor-hiiragi2013

• bioconductor-keggprofile

• bioconductor-fella

• bioconductor-transomics2cytoscape

• bioconductor-famat

• bioconductor-gage

• bioconductor-adsplit

• bioconductor-rnaseqsamplesize

• bioconductor-adam

• bioconductor-smite

• bioconductor-enrichmentbrowser

• bioconductor-kegglincs

• bioconductor-yapsa

• bioconductor-mwastools

• bioconductor-norce

• bioconductor-pathview

• bioconductor-attract

• r-metaboanalyst

• bioconductor-biocset

• bioconductor-rontotools

• bioconductor-chippeakanno

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-keggrest

and update with:

conda update bioconductor-keggrest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-keggrest:<tag>

(see bioconductor-keggrest/tags for valid values for <tag>)

Download stats

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