recipe bioconductor-keggrest

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/KEGGREST.html

License:

Artistic-2.0

Recipe:

/bioconductor-keggrest/meta.yaml

Links:

biotools: keggrest, doi: 10.1007/s11845-015-1283-8

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

package bioconductor-keggrest

Versions:

1.34.0-0,  1.32.0-0,  1.30.1-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.2-0, 

1.34.0-0,  1.32.0-0,  1.30.1-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.2-0,  1.18.0-0,  1.16.1-0,  1.14.1-0,  1.12.3-0,  1.10.1-0

Depends:

• bioconductor-biostrings >=2.62.0,<2.63.0

• r-base >=4.1,<4.2.0a0

• r-httr

• r-png

Required By:

• bioconductor-kegglincs

• bioconductor-padog

• bioconductor-adam

• bioconductor-rontotools

• bioconductor-norce

• bioconductor-chippeakanno

• bioconductor-attract

• r-metaboanalyst

• bioconductor-fella

• bioconductor-enrichmentbrowser

• bioconductor-rnaseqsamplesize

• bioconductor-mwastools

• bioconductor-metabosignal

• bioconductor-pathview

• bioconductor-annotationdbi

• bioconductor-hiiragi2013

• bioconductor-sbgnview

• bioconductor-cner

• bioconductor-pairkat

• bioconductor-adsplit

• bioconductor-geneanswers

• bioconductor-smite

• bioconductor-famat

• bioconductor-transomics2cytoscape

• bioconductor-yapsa

• bioconductor-gage

• bioconductor-biocset

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-keggrest

and update with:

conda update bioconductor-keggrest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-keggrest:<tag>

(see bioconductor-keggrest/tags for valid values for <tag>)

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