Package Recipe 'bioconductor-kodata'

recipe bioconductor-kodata

LINCS Knock-Out Data Package

Homepage:: https://bioconductor.org/packages/3.16/data/experiment/html/KOdata.html
License:: MIT + file LICENSE
Recipe:: /bioconductor-kodata/meta.yaml

Contains consensus genomic signatures (CGS) for experimental cell-line specific gene knock-outs as well as baseline gene expression data for a subset of experimental cell-lines. Intended for use with package KEGGlincs.

package bioconductor-kodata¶

Versions:

1.24.0-0, 1.23.0-0, 1.20.0-1, 1.20.0-0, 1.18.0-0, 1.16.0-1, 1.16.0-0, 1.15.0-0, 1.14.0-0,

1.24.0-0, 1.23.0-0, 1.20.0-1, 1.20.0-0, 1.18.0-0, 1.16.0-1, 1.16.0-0, 1.15.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0

Depends:

bioconductor-data-packages >=20221110
curl
r-base >=4.2,<4.3.0a0

Required By:

bioconductor-kegglincs

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-kodata

and update with:

conda update bioconductor-kodata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-kodata:<tag>

(see bioconductor-kodata/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-kodata/README.html)