recipe bioconductor-les

The ‘les’ package estimates Loci of Enhanced Significance (LES) in tiling microarray data. These are regions of regulation such as found in differential transcription, CHiP-chip, or DNA modification analysis. The package provides a universal framework suitable for identifying differential effects in tiling microarray data sets, and is independent of the underlying statistics at the level of single probes.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/les.html

License

GPL-3

Recipe

/bioconductor-les/meta.yaml

Links

biotools: les, doi: 10.1089/cmb.2008.0226

package bioconductor-les

(downloads) docker_bioconductor-les

Versions

1.34.0-0, 1.32.0-0, 1.30.0-0, 1.28.0-0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-boot

Depends r-fdrtool

Depends r-gplots

Depends r-rcolorbrewer

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-les

and update with:

conda update bioconductor-les

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-les:<tag>

(see bioconductor-les/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-les/README.html)