recipe bioconductor-levi

Landscape Expression Visualization Interface

Homepage

https://bioconductor.org/packages/3.11/bioc/html/levi.html

License

GPL (>= 2)

Recipe

/bioconductor-levi/meta.yaml

The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.

package bioconductor-levi

Versions

1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-colorspace >=1.3-2

• r-dplyr >=0.7.4

• r-dt >=0.4

• r-ggplot2 >=2.2.1

• r-httr >=1.3.1

• r-igraph >=1.2.1

• r-knitr

• r-rcolorbrewer >=1.1-2

• r-rcpp >=0.12.18

• r-reshape2 >=1.4.3

• r-shiny >=1.0.5

• r-shinydashboard >=0.7.0

• r-shinyjs >=1.0

• r-testthat

• r-xml2 >=1.2.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-levi

and update with:

conda update bioconductor-levi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-levi:<tag>

(see bioconductor-levi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-levi/README.html)