- recipe bioconductor-lineagepulse
Differential expression analysis and model fitting for single-cell RNA-seq data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/LineagePulse.html
- License
Artistic-2.0
- Recipe
LineagePulse is a differential expression and expression model fitting package tailored to single-cell RNA-seq data (scRNA-seq). LineagePulse accounts for batch effects, drop-out and variable sequencing depth. One can use LineagePulse to perform longitudinal differential expression analysis across pseudotime as a continuous coordinate or between discrete groups of cells (e.g. pre-defined clusters or experimental conditions). Expression model fits can be directly extracted from LineagePulse.
- package bioconductor-lineagepulse¶
-
- Versions
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-0
- Depends
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-lineagepulse
and update with:
conda update bioconductor-lineagepulse
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-lineagepulse:<tag>
(see bioconductor-lineagepulse/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-lineagepulse/README.html)