recipe bioconductor-loci2path

Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/loci2path.html

License:

Artistic-2.0

Recipe:

/bioconductor-loci2path/meta.yaml

loci2path performs statistics-rigorous enrichment analysis of eQTLs in genomic regions of interest. Using eQTL collections provided by the Genotype-Tissue Expression (GTEx) project and pathway collections from MSigDB.

package bioconductor-loci2path

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-1, 

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-1,  1.2.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-pheatmap

• r-rcolorbrewer

• r-wordcloud

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-loci2path

and update with:

conda update bioconductor-loci2path

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-loci2path:<tag>

(see bioconductor-loci2path/tags for valid values for <tag>)

Download stats

Link to this page

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