- recipe bioconductor-loci2path
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/loci2path.html
- License:
Artistic-2.0
- Recipe:
loci2path performs statistics-rigorous enrichment analysis of eQTLs in genomic regions of interest. Using eQTL collections provided by the Genotype-Tissue Expression (GTEx) project and pathway collections from MSigDB.
- package bioconductor-loci2path¶
-
- Versions:
1.18.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-1
,1.18.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-1
,1.2.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-loci2path
and update with:
conda update bioconductor-loci2path
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-loci2path:<tag>
(see bioconductor-loci2path/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-loci2path/README.html)