recipe bioconductor-lola

Locus overlap analysis for enrichment of genomic ranges

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/LOLA.html

License:

GPL-3

Recipe:

/bioconductor-lola/meta.yaml

Links:

biotools: lola, doi: 10.1093/bioinformatics/btv612

Provides functions for testing overlap of sets of genomic regions with public and custom region set (genomic ranges) databases. This makes it possible to do automated enrichment analysis for genomic region sets, thus facilitating interpretation of functional genomics and epigenomics data.

package bioconductor-lola

Versions:

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-lola

and update with:

conda update bioconductor-lola

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lola:<tag>

(see bioconductor-lola/tags for valid values for <tag>)

Download stats

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