recipe bioconductor-loomexperiment

LoomExperiment container

Homepage

https://bioconductor.org/packages/3.11/bioc/html/LoomExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-loomexperiment/meta.yaml

The LoomExperiment class provide a means to easily convert Bioconductor's "Experiment" classes to loom files and vice versa.

package bioconductor-loomexperiment

Versions

1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.4-0,  1.0.1-0

Depends

• bioconductor-delayedarray >=0.14.0,<0.15.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-hdf5array >=1.16.0,<1.17.0

• bioconductor-rhdf5 >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-matrix

• r-stringr

Required By

• scmap-cli

• r-sceasy

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-loomexperiment

and update with:

conda update bioconductor-loomexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-loomexperiment:<tag>

(see bioconductor-loomexperiment/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-loomexperiment/README.html)