recipe bioconductor-loomexperiment

LoomExperiment container

Homepage

https://bioconductor.org/packages/3.14/bioc/html/LoomExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-loomexperiment/meta.yaml

The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.

package bioconductor-loomexperiment

Versions

1.12.0-0,  1.10.1-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.4-0,  1.0.1-0

Depends

• bioconductor-biocio >=1.4.0,<1.5.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-hdf5array >=1.22.0,<1.23.0

• bioconductor-rhdf5 >=2.38.0,<2.39.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-matrix

• r-stringr

Required By

• r-sceasy

• scmap-cli

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-loomexperiment

and update with:

conda update bioconductor-loomexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-loomexperiment:<tag>

(see bioconductor-loomexperiment/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-loomexperiment/README.html)