recipe bioconductor-m6aboost

m6Aboost

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/m6Aboost.html

License:

Artistic-2.0

Recipe:

/bioconductor-m6aboost/meta.yaml

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

package bioconductor-m6aboost

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-adabag

• r-base >=4.2,<4.3.0a0

• r-dplyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-m6aboost

and update with:

conda update bioconductor-m6aboost

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-m6aboost:<tag>

(see bioconductor-m6aboost/tags for valid values for <tag>)

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