- recipe bioconductor-macarron
Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/Macarron.html
- License:
MIT + file LICENSE
- Recipe:
Macarron is a workflow for the prioritization of potentially bioactive metabolites from metabolomics experiments. Prioritization integrates strengths of evidences of bioactivity such as covariation with a known metabolite, abundance relative to a known metabolite and association with an environmental or phenotypic indicator of bioactivity. Broadly, the workflow consists of stratified clustering of metabolic spectral features which co-vary in abundance in a condition, transfer of functional annotations, estimation of relative abundance and differential abundance analysis to identify associations between features and phenotype/condition.
- package bioconductor-macarron¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-maaslin2
>=1.12.0,<1.13.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-macarron
and update with:
conda update bioconductor-macarron
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-macarron:<tag>
(see bioconductor-macarron/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-macarron/README.html)