recipe bioconductor-macarron

Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Macarron.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-macarron/meta.yaml

Macarron is a workflow for the prioritization of potentially bioactive metabolites from metabolomics experiments. Prioritization integrates strengths of evidences of bioactivity such as covariation with a known metabolite, abundance relative to a known metabolite and association with an environmental or phenotypic indicator of bioactivity. Broadly, the workflow consists of stratified clustering of metabolic spectral features which co-vary in abundance in a condition, transfer of functional annotations, estimation of relative abundance and differential abundance analysis to identify associations between features and phenotype/condition.

package bioconductor-macarron

Versions:

1.2.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-maaslin2 >=1.12.0,<1.13.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dynamictreecut

• r-ff

• r-logging

• r-plyr

• r-psych

• r-rcurl

• r-rjsonio

• r-wgcna

• r-xml2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-macarron

and update with:

conda update bioconductor-macarron

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-macarron:<tag>

(see bioconductor-macarron/tags for valid values for <tag>)

Download stats

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