recipe bioconductor-mafdb.topmed.freeze5.hg38

Minor allele frequency data from TOPMed for hg38

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/MafDb.TOPMed.freeze5.hg38.html

License:

Artistic-2.0

Recipe:

/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml

Store minor allele frequency data from NHLBI TOPMed for the human genome version hg38.

package bioconductor-mafdb.topmed.freeze5.hg38

Versions:

3.10.0-7,  3.10.0-6,  3.10.0-5,  3.10.0-4,  3.10.0-3,  3.10.0-2,  3.10.0-1,  3.10.0-0,  3.9.0-1, 

3.10.0-7,  3.10.0-6,  3.10.0-5,  3.10.0-4,  3.10.0-3,  3.10.0-2,  3.10.0-1,  3.10.0-0,  3.9.0-1,  3.7.1-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221103

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-genomicscores >=2.10.0,<2.11.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mafdb.topmed.freeze5.hg38

and update with:

conda update bioconductor-mafdb.topmed.freeze5.hg38

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mafdb.topmed.freeze5.hg38:<tag>

(see bioconductor-mafdb.topmed.freeze5.hg38/tags for valid values for <tag>)

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