recipe bioconductor-maftools

Summarize, Analyze and Visualize MAF Files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/maftools.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-maftools/meta.yaml

Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.

package bioconductor-maftools

Versions:

2.14.0-1,  2.14.0-0,  2.10.05-0,  2.10.0-1,  2.10.0-0,  2.8.0-0,  2.6.05-0,  2.6.0-0,  2.4.0-0, 

2.14.0-1,  2.14.0-0,  2.10.05-0,  2.10.0-1,  2.10.0-0,  2.8.0-0,  2.6.05-0,  2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.10-0,  2.0.0-0,  1.8.0-0,  1.6.15-0,  1.4.27-0

Depends:

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-rhtslib >=2.0.0,<2.1.0

• bioconductor-zlibbioc >=1.44.0,<1.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-rcolorbrewer

• r-survival

Required By:

• bioconductor-musicatk

• bioconductor-cimice

• r-pathwaytmb

• bioconductor-tcgabiolinksgui

• bioconductor-katdetectr

• r-sigminer

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-maftools

and update with:

conda update bioconductor-maftools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-maftools:<tag>

(see bioconductor-maftools/tags for valid values for <tag>)

Download stats

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