- recipe bioconductor-magar
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
- Homepage
- License
GPL-3
- Recipe
"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.
- package bioconductor-magar¶
-
- Versions
1.2.0-0
,1.0.0-0
- Depends
bioconductor-crlmm
>=1.52.0,<1.53.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-impute
>=1.68.0,<1.69.0
bioconductor-rnbeads
>=2.12.0,<2.13.0
bioconductor-rnbeads.hg19
>=1.26.0,<1.27.0
bioconductor-snpstats
>=1.44.0,<1.45.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-magar
and update with:
conda update bioconductor-magar
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-magar:<tag>
(see bioconductor-magar/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-magar/README.html)