recipe bioconductor-mageckflute

Integrative analysis pipeline for pooled CRISPR functional genetic screens

Homepage

https://bioconductor.org/packages/3.10/bioc/html/MAGeCKFlute.html

License

GPL (>=3)

Recipe

/bioconductor-mageckflute/meta.yaml

MAGeCKFlute is designed to surporting downstream analysis, utilizing the gene summary data provided through MAGeCK or MAGeCK-VISPR. Quality control, normalization, and screen hit identification for CRISPR screen data are performed in pipeline. Identified hits within the pipeline are categorized based on experimental design, and are subsequently interpreted by functional enrichment analysis.

package bioconductor-mageckflute

(downloads) docker_bioconductor-mageckflute

Versions

1.6.0-0, 1.4.2-0, 1.2.3-0, 1.2.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mageckflute

and update with:

conda update bioconductor-mageckflute

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mageckflute:<tag>

(see bioconductor-mageckflute/tags for valid values for <tag>)