recipe bioconductor-mageckflute

MAGeCKFlute is designed to surporting downstream analysis, utilizing the gene summary data provided through MAGeCK or MAGeCK-VISPR. Quality control, normalization, and screen hit identification for CRISPR screen data are performed in pipeline. Identified hits within the pipeline are categorized based on experimental design, and are subsequently interpreted by functional enrichment analysis.



GPL (>=3)



package bioconductor-mageckflute

(downloads) docker_bioconductor-mageckflute


1.2.3-0, 1.2.2-0

Depends bioconductor-biomart


Depends bioconductor-bladderbatch


Depends bioconductor-clusterprofiler


Depends bioconductor-dose


Depends bioconductor-pathview


Depends bioconductor-sva


Depends r-base


Depends r-data.table

Depends r-ggextra

Depends r-ggplot2

Depends r-ggrepel

Depends r-ggsci

Depends r-gridextra

Depends r-pheatmap

Depends r-png



With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mageckflute

and update with:

conda update bioconductor-mageckflute

or use the docker container:

docker pull<tag>

(see bioconductor-mageckflute/tags for valid values for <tag>)