recipe bioconductor-matrixgenerics

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/MatrixGenerics.html

License:

Artistic-2.0

Recipe:

/bioconductor-matrixgenerics/meta.yaml

S4 generic functions modeled after the 'matrixStats' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.

package bioconductor-matrixgenerics

(downloads) docker_bioconductor-matrixgenerics

versions:
1.18.0-0,  1.14.0-3,  1.14.0-2,  1.14.0-1,  1.14.0-0,  1.12.2-0,  1.10.0-0,  1.6.0-0,  1.4.0-0, 

1.18.0-0,  1.14.0-3,  1.14.0-2,  1.14.0-1,  1.14.0-0,  1.12.2-0,  1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

depends r-base:

>=4.4,<4.5.0a0

depends r-matrixstats:

>=1.4.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-matrixgenerics

and update with::

   mamba update bioconductor-matrixgenerics

To create a new environment, run:

mamba create --name myenvname bioconductor-matrixgenerics

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-matrixgenerics:<tag>

(see `bioconductor-matrixgenerics/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-matrixgenerics/README.html)