recipe bioconductor-matrixrider

Obtain total affinity and occupancies for binding site matrices on a given sequence

Homepage

https://bioconductor.org/packages/3.10/bioc/html/MatrixRider.html

License

GPL-3

Recipe

/bioconductor-matrixrider/meta.yaml

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

package bioconductor-matrixrider

(downloads) docker_bioconductor-matrixrider

Versions

1.18.0-0, 1.16.0-1, 1.14.0-1, 1.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-matrixrider

and update with:

conda update bioconductor-matrixrider

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-matrixrider:<tag>

(see bioconductor-matrixrider/tags for valid values for <tag>)