recipe bioconductor-mbased

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MBASED.html

License

Artistic-2.0

Recipe

/bioconductor-mbased/meta.yaml

Links

biotools: mbased, doi: 10.1186/s13059-014-0405-3

package bioconductor-mbased

(downloads) docker_bioconductor-mbased

Versions

1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mbased

and update with:

conda update bioconductor-mbased

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mbased:<tag>

(see bioconductor-mbased/tags for valid values for <tag>)