recipe bioconductor-mbased

Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MBASED.html

License:

Artistic-2.0

Recipe:

/bioconductor-mbased/meta.yaml

Links:

biotools: mbased, doi: 10.1186/s13059-014-0405-3

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

package bioconductor-mbased

(downloads) docker_bioconductor-mbased

Versions:
1.32.0-01.28.0-01.26.0-01.24.0-11.24.0-01.22.0-01.20.0-01.18.0-11.16.0-0

1.32.0-01.28.0-01.26.0-01.24.0-11.24.0-01.22.0-01.20.0-01.18.0-11.16.0-01.14.0-01.12.0-01.10.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mbased

and update with:

conda update bioconductor-mbased

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mbased:<tag>

(see bioconductor-mbased/tags for valid values for <tag>)

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