recipe bioconductor-mbkmeans

Mini-batch K-means Clustering for Single-Cell RNA-seq

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/mbkmeans.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-mbkmeans/meta.yaml

Implements the mini-batch k-means algorithm for large datasets, including support for on-disk data representation.

package bioconductor-mbkmeans

Versions:

1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.1-0,  1.6.0-0,  1.4.0-0,  1.2.0-0, 

1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.1-0,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-beachmat >=2.14.0,<2.15.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-rhdf5lib >=1.20.0,<1.21.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-benchmarkme

• r-clusterr

• r-matrix

• r-rcpp

• r-rcpparmadillo >=0.7.2

Required By:

• bioconductor-clusterexperiment

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mbkmeans

and update with:

conda update bioconductor-mbkmeans

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mbkmeans:<tag>

(see bioconductor-mbkmeans/tags for valid values for <tag>)

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