recipe bioconductor-mbkmeans

Mini-batch K-means Clustering for Single-Cell RNA-seq

Homepage

https://bioconductor.org/packages/3.14/bioc/html/mbkmeans.html

License

MIT + file LICENSE

Recipe

/bioconductor-mbkmeans/meta.yaml

Implements the mini-batch k-means algorithm for large datasets, including support for on-disk data representation.

package bioconductor-mbkmeans

Versions

1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.1-0,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-beachmat >=2.10.0,<2.11.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-rhdf5lib >=1.16.0,<1.17.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-benchmarkme

• r-clusterr

• r-matrix

• r-rcpp

• r-rcpparmadillo >=0.7.2

Required By

• bioconductor-clusterexperiment

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mbkmeans

and update with:

conda update bioconductor-mbkmeans

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mbkmeans:<tag>

(see bioconductor-mbkmeans/tags for valid values for <tag>)

Download stats

Link to this page

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