recipe bioconductor-mbpcr

Bayesian Piecewise Constant Regression for DNA copy number estimation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/mBPCR.html

License

GPL (>= 2)

Recipe

/bioconductor-mbpcr/meta.yaml

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

package bioconductor-mbpcr

Versions

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-gwastools >=1.34.0,<1.35.0

• bioconductor-oligoclasses >=1.50.0,<1.51.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mbpcr

and update with:

conda update bioconductor-mbpcr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mbpcr:<tag>

(see bioconductor-mbpcr/tags for valid values for <tag>)

Link to this page

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