recipe bioconductor-mbpcr

Bayesian Piecewise Constant Regression for DNA copy number estimation

Homepage

https://bioconductor.org/packages/3.13/bioc/html/mBPCR.html

License

GPL (>= 2)

Recipe

/bioconductor-mbpcr/meta.yaml

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

package bioconductor-mbpcr

Versions

1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-gwastools >=1.38.0,<1.39.0

• bioconductor-oligoclasses >=1.54.0,<1.55.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mbpcr

and update with:

conda update bioconductor-mbpcr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mbpcr:<tag>

(see bioconductor-mbpcr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mbpcr/README.html)