recipe bioconductor-mdp

The Molecular Degree of Perturbation webtool quantifies the heterogeneity of samples. It takes a data.frame of omic data that contains at least two classes (control and test) and assigns a score to all samples based on how perturbed they are compared to the controls. It is based on the Molecular Distance to Health (Pankla et al. 2009), and expands on this algorithm by adding the options to calculate the z-score using the modified z-score (using median absolute deviation), change the z-score zeroing threshold, and look at genes that are most perturbed in the test versus control classes.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/mdp.html

License

GPL-3

Recipe

/bioconductor-mdp/meta.yaml

package bioconductor-mdp

(downloads) docker_bioconductor-mdp

Versions

1.4.0-0, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mdp

and update with:

conda update bioconductor-mdp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mdp:<tag>

(see bioconductor-mdp/tags for valid values for <tag>)