recipe bioconductor-mdts

Detection of de novo deletion in targeted sequencing trios

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MDTS.html

License:

Artistic-2.0

Recipe:

/bioconductor-mdts/meta.yaml

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

package bioconductor-mdts

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• r-base >=4.2,<4.3.0a0

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mdts

and update with:

conda update bioconductor-mdts

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mdts:<tag>

(see bioconductor-mdts/tags for valid values for <tag>)

Download stats

Link to this page

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