- recipe bioconductor-meal
Perform methylation analysis
- Homepage
- License
Artistic-2.0
- Recipe
Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.
- package bioconductor-meal¶
-
- Versions
1.22.0-0
,1.20.3-0
,1.20.0-0
,1.18.0-0
,1.15.0-0
,1.14.0-1
,1.12.0-0
- Depends
bioconductor-biobase
>=2.52.0,<2.53.0
bioconductor-biocgenerics
>=0.38.0,<0.39.0
bioconductor-genomicranges
>=1.44.0,<1.45.0
bioconductor-gviz
>=1.36.0,<1.37.0
bioconductor-iranges
>=2.26.0,<2.27.0
bioconductor-limma
>=3.48.0,<3.49.0
bioconductor-minfi
>=1.38.0,<1.39.0
bioconductor-missmethyl
>=1.26.0,<1.27.0
bioconductor-multidataset
>=1.20.0,<1.21.0
bioconductor-s4vectors
>=0.30.0,<0.31.0
bioconductor-summarizedexperiment
>=1.22.0,<1.23.0
r-base
>=4.1,<4.2.0a0
r-ggplot2
>=2.0.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-meal
and update with:
conda update bioconductor-meal
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-meal:<tag>
(see bioconductor-meal/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-meal/README.html)