recipe bioconductor-meal

Perform methylation analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/MEAL.html

License

Artistic-2.0

Recipe

/bioconductor-meal/meta.yaml

Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.

package bioconductor-meal

Versions

1.22.0-0,  1.20.3-0,  1.20.0-0,  1.18.0-0,  1.15.0-0,  1.14.0-1,  1.12.0-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-gviz >=1.36.0,<1.37.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-limma >=3.48.0,<3.49.0

• bioconductor-minfi >=1.38.0,<1.39.0

• bioconductor-missmethyl >=1.26.0,<1.27.0

• bioconductor-multidataset >=1.20.0,<1.21.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2 >=2.0.0

• r-isva

• r-matrixstats

• r-permute

• r-smartsva

• r-vegan

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-meal

and update with:

conda update bioconductor-meal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-meal:<tag>

(see bioconductor-meal/tags for valid values for <tag>)

Download stats

Link to this page

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