recipe bioconductor-meal

Perform methylation analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MEAL.html

License

Artistic-2.0

Recipe

/bioconductor-meal/meta.yaml

Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.

package bioconductor-meal

Versions

1.18.0-0, 1.15.0-0, 1.14.0-1, 1.12.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-minfi >=1.34.0,<1.35.0

• bioconductor-missmethyl >=1.22.0,<1.23.0

• bioconductor-multidataset >=1.16.0,<1.17.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2 >=2.0.0

• r-isva

• r-matrixstats

• r-permute

• r-smartsva

• r-vegan

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-meal

and update with:

conda update bioconductor-meal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-meal:<tag>

(see bioconductor-meal/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-meal/README.html)