recipe bioconductor-meal

Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MEAL.html

License

Artistic-2.0

Recipe

/bioconductor-meal/meta.yaml

package bioconductor-meal

Versions

1.12.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-dmrcate >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-gviz >=1.26.0,<1.27.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-limma >=3.38.0,<3.39.0

• bioconductor-minfi >=1.28.0,<1.29.0

• bioconductor-missmethyl >=1.16.0,<1.17.0

• bioconductor-multidataset >=1.10.0,<1.11.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• r-base >=3.5.1,<3.5.2.0a0

• r-ggplot2 >=2.0.0

• r-isva

• r-matrixstats

• r-permute

• r-smartsva

• r-vegan

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-meal

and update with:

conda update bioconductor-meal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-meal:<tag>

(see bioconductor-meal/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-meal/README.html)