MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-medips
and update with:
conda update bioconductor-medips
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-medips.