recipe bioconductor-medips

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/MEDIPS.html

License

GPL (>=2)

Recipe

/bioconductor-medips/meta.yaml

Links

biotools: medips

package bioconductor-medips

(downloads) docker_bioconductor-medips

Versions

1.34.0-0, 1.32.0-0, 1.30.0-0, 1.28.0-0, 1.24.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-medips

and update with:

conda update bioconductor-medips

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-medips:<tag>

(see bioconductor-medips/tags for valid values for <tag>)