recipe bioconductor-megadepth

megadepth: BigWig and BAM related utilities

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/megadepth.html

License:

Artistic-2.0

Recipe:

/bioconductor-megadepth/meta.yaml

This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.

package bioconductor-megadepth

(downloads) docker_bioconductor-megadepth

Versions:

1.4.0-01.2.0-01.0.3-01.0.0-1

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-megadepth

and update with:

conda update bioconductor-megadepth

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-megadepth:<tag>

(see bioconductor-megadepth/tags for valid values for <tag>)

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