- recipe bioconductor-megadepth
megadepth: BigWig and BAM related utilities
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/megadepth.html
- License
Artistic-2.0
- Recipe
This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.
- package bioconductor-megadepth¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.3-0
,1.0.0-1
- Depends
bioconductor-genomicranges
>=1.46.0,<1.47.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-megadepth
and update with:
conda update bioconductor-megadepth
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-megadepth:<tag>
(see bioconductor-megadepth/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-megadepth/README.html)