recipe bioconductor-memes

motif matching, comparison, and de novo discovery using the MEME Suite

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/memes.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-memes/meta.yaml

A seamless interface to the MEME Suite family of tools for motif analysis. 'memes' provides data aware utilities for using GRanges objects as entrypoints to motif analysis, data structures for examining & editing motif lists, and novel data visualizations. 'memes' functions and data structures are amenable to both base R and tidyverse workflows.

package bioconductor-memes

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-universalmotif >=1.16.0,<1.17.0

• r-base >=4.2,<4.3.0a0

• r-cmdfun >=1.0.2

• r-dplyr

• r-ggplot2

• r-ggseqlogo

• r-magrittr

• r-matrixstats

• r-patchwork

• r-processx

• r-purrr

• r-readr

• r-rlang

• r-tibble

• r-tidyr

• r-usethis

• r-xml2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-memes

and update with:

conda update bioconductor-memes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-memes:<tag>

(see bioconductor-memes/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-memes/README.html)