- recipe bioconductor-merfishdata
Collection of public MERFISH datasets
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/MerfishData.html
- License:
Artistic-2.0
- Recipe:
MerfishData is an ExperimentHub package that serves publicly available datasets obtained with Multiplexed Error-Robust Fluorescence in situ Hybridization (MERFISH). MERFISH is a massively multiplexed single-molecule imaging technology capable of simultaneously measuring the copy number and spatial distribution of hundreds to tens of thousands of RNA species in individual cells. The scope of the package is to provide MERFISH data for benchmarking and analysis.
- package bioconductor-merfishdata¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-bumpymatrix
>=1.6.0,<1.7.0
bioconductor-data-packages
>=20221108
bioconductor-ebimage
>=4.40.0,<4.41.0
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-spatialexperiment
>=1.8.0,<1.9.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-merfishdata
and update with:
conda update bioconductor-merfishdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-merfishdata:<tag>
(see bioconductor-merfishdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-merfishdata/README.html)