recipe bioconductor-merfishdata

Collection of public MERFISH datasets

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/MerfishData.html

License:

Artistic-2.0

Recipe:

/bioconductor-merfishdata/meta.yaml

MerfishData is an ExperimentHub package that serves publicly available datasets obtained with Multiplexed Error-Robust Fluorescence in situ Hybridization (MERFISH). MERFISH is a massively multiplexed single-molecule imaging technology capable of simultaneously measuring the copy number and spatial distribution of hundreds to tens of thousands of RNA species in individual cells. The scope of the package is to provide MERFISH data for benchmarking and analysis.

package bioconductor-merfishdata

Versions:

1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-bumpymatrix >=1.6.0,<1.7.0

• bioconductor-data-packages >=20221108

• bioconductor-ebimage >=4.40.0,<4.41.0

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-spatialexperiment >=1.8.0,<1.9.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-merfishdata

and update with:

conda update bioconductor-merfishdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-merfishdata:<tag>

(see bioconductor-merfishdata/tags for valid values for <tag>)

Download stats

Link to this page

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