recipe bioconductor-meshes

MeSH (Medical Subject Headings) is the NLM controlled vocabulary used to manually index articles for MEDLINE/PubMed. MeSH terms were associated by Entrez Gene ID by three methods, gendoo, gene2pubmed and RBBH. This association is fundamental for enrichment and semantic analyses. meshes supports enrichment analysis (over-representation and gene set enrichment analysis) of gene list or whole expression profile. The semantic comparisons of MeSH terms provide quantitative ways to compute similarities between genes and gene groups. meshes implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively and supports more than 70 species.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/meshes.html

License

Artistic-2.0

Recipe

/bioconductor-meshes/meta.yaml

Links

biotools: meshes, doi: 10.1038/nmeth.3252

package bioconductor-meshes

(downloads) docker_bioconductor-meshes

Versions

1.8.0-0, 1.6.1-0, 1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-meshes

and update with:

conda update bioconductor-meshes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-meshes:<tag>

(see bioconductor-meshes/tags for valid values for <tag>)