recipe bioconductor-metabcombiner

Method for Combining LC-MS Metabolomics Feature Measurements

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/metabCombiner.html

License:

GPL-3

Recipe:

/bioconductor-metabcombiner/meta.yaml

This package aligns LC-HRMS metabolomics datasets acquired from biologically similar specimens analyzed under similar, but not necessarily identical, conditions. Peak-picked and simply aligned metabolomics feature tables (consisting of m/z, rt, and per-sample abundance measurements, plus optional identifiers & adduct annotations) are accepted as input. The package outputs a combined table of feature pair alignments, organized into groups of similar m/z, and ranked by a similarity score. Input tables are assumed to be acquired using similar (but not necessarily identical) analytical methods.

package bioconductor-metabcombiner

Versions:

1.8.0-0,  1.4.0-2,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.1-0,  1.0.0-1

Depends:

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-caret

• r-dplyr >=1.0

• r-matrixstats

• r-mgcv

• r-rlang

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-metabcombiner

and update with:

conda update bioconductor-metabcombiner

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metabcombiner:<tag>

(see bioconductor-metabcombiner/tags for valid values for <tag>)

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