recipe bioconductor-metagxpancreas

Transcriptomic Pancreatic Cancer Datasets

Homepage

https://bioconductor.org/packages/3.12/data/experiment/html/MetaGxPancreas.html

License

Artistic-2.0

Recipe

/bioconductor-metagxpancreas/meta.yaml

A collection of pancreatic Cancer transcriptomic datasets that are part of the MetaGxData package compendium. This package contains multiple pancreas cancer datasets that have been downloaded from various resources and turned into SummarizedExperiment objects. The details of how the authors normalized the data can be found in the experiment data section of the objects. Additionally, the location the data was obtained from can be found in the url variables of the experiment data portion of each SE.

package bioconductor-metagxpancreas

Versions

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends

• bioconductor-annotationhub >=2.22.0,<2.23.0

• bioconductor-experimenthub >=1.16.0,<1.17.0

• bioconductor-impute >=1.64.0,<1.65.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-summarizedexperiment >=1.20.0,<1.21.0

• curl >=7.71.1,<8.0a0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-metagxpancreas

and update with:

conda update bioconductor-metagxpancreas

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metagxpancreas:<tag>

(see bioconductor-metagxpancreas/tags for valid values for <tag>)

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metagxpancreas/README.html)