recipe bioconductor-metavolcanor

Gene Expression Meta-analysis Visualization Tool

Homepage

https://bioconductor.org/packages/3.14/bioc/html/MetaVolcanoR.html

License

GPL-3

Recipe

/bioconductor-metavolcanor/meta.yaml

MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.

package bioconductor-metavolcanor

Versions

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  0.99.14-0

Depends

• bioconductor-topconfects >=1.10.0,<1.11.0

• r-base >=4.1,<4.2.0a0

• r-cowplot

• r-data.table

• r-dplyr

• r-ggplot2

• r-htmlwidgets

• r-metafor

• r-metap

• r-plotly

• r-rlang

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-metavolcanor

and update with:

conda update bioconductor-metavolcanor

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metavolcanor:<tag>

(see bioconductor-metavolcanor/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metavolcanor/README.html)