recipe bioconductor-methimpute

Imputation-guided re-construction of complete methylomes from WGBS data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/methimpute.html

License:

Artistic-2.0

Recipe:

/bioconductor-methimpute/meta.yaml

This package implements functions for calling methylation for all cytosines in the genome.

package bioconductor-methimpute

Versions:

1.20.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0, 

1.20.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.1-0,  1.4.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-ggplot2

• r-minpack.lm

• r-rcpp >=0.12.4.5

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-methimpute

and update with:

conda update bioconductor-methimpute

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methimpute:<tag>

(see bioconductor-methimpute/tags for valid values for <tag>)

Download stats

Link to this page

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