- recipe bioconductor-methrix
Fast and efficient summarization of generic bedGraph files from Bisufite sequencing
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/methrix.html
- License:
MIT + file LICENSE
- Recipe:
Bedgraph files generated by Bisulfite pipelines often come in various flavors. Critical downstream step requires summarization of these files into methylation/coverage matrices. This step of data aggregation is done by Methrix, including many other useful downstream functions.
- package bioconductor-methrix¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.07-0
,1.4.0-0
,1.2.05-0
,1.0.0-0
- Depends:
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-delayedmatrixstats
>=1.20.0,<1.21.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-hdf5array
>=1.26.0,<1.27.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-data.table
>=1.12.4
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-methrix
and update with:
conda update bioconductor-methrix
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methrix:<tag>
(see bioconductor-methrix/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methrix/README.html)