recipe bioconductor-methylaid

A visual and interactive web application using RStudio’s shiny package. Bad quality samples are detected using sample-dependent and sample-independent controls present on the array and user adjustable thresholds. In depth exploration of bad quality samples can be performed using several interactive diagnostic plots of the quality control probes present on the array. Furthermore, the impact of any batch effect provided by the user can be explored.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MethylAid.html

License

GPL (>= 2)

Recipe

/bioconductor-methylaid/meta.yaml

package bioconductor-methylaid

(downloads) docker_bioconductor-methylaid

Versions

1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylaid

and update with:

conda update bioconductor-methylaid

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylaid:<tag>

(see bioconductor-methylaid/tags for valid values for <tag>)