- recipe bioconductor-methylcc
Estimate the cell composition of whole blood in DNA methylation samples
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/methylCC.html
- License
CC BY 4.0
- Recipe
A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).
- package bioconductor-methylcc¶
-
- Versions
1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
bioconductor-biobase
>=2.52.0,<2.53.0
bioconductor-bsseq
>=1.28.0,<1.29.0
bioconductor-bumphunter
>=1.34.0,<1.35.0
bioconductor-flowsorted.blood.450k
>=1.30.0,<1.31.0
bioconductor-genefilter
>=1.74.0,<1.75.0
bioconductor-genomicranges
>=1.44.0,<1.45.0
bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
>=0.6.0,<0.7.0
bioconductor-illuminahumanmethylation450kmanifest
>=0.4.0,<0.5.0
bioconductor-iranges
>=2.26.0,<2.27.0
bioconductor-minfi
>=1.38.0,<1.39.0
bioconductor-plyranges
>=1.12.0,<1.13.0
bioconductor-s4vectors
>=0.30.0,<0.31.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methylcc
and update with:
conda update bioconductor-methylcc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylcc:<tag>
(see bioconductor-methylcc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylcc/README.html)