recipe bioconductor-methylcc

Estimate the cell composition of whole blood in DNA methylation samples

Homepage

https://bioconductor.org/packages/3.11/bioc/html/methylCC.html

License

CC BY 4.0

Recipe

/bioconductor-methylcc/meta.yaml

A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).

package bioconductor-methylcc

Versions

1.2.0-0,  1.0.0-1

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-bsseq >=1.24.0,<1.25.0

• bioconductor-bumphunter >=1.30.0,<1.31.0

• bioconductor-flowsorted.blood.450k >=1.26.0,<1.27.0

• bioconductor-genefilter >=1.70.0,<1.71.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-minfi >=1.34.0,<1.35.0

• bioconductor-plyranges >=1.8.0,<1.9.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-dplyr

• r-magrittr

• r-quadprog

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylcc

and update with:

conda update bioconductor-methylcc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylcc:<tag>

(see bioconductor-methylcc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylcc/README.html)