recipe bioconductor-methylcc

Estimate the cell composition of whole blood in DNA methylation samples

Homepage

https://bioconductor.org/packages/3.14/bioc/html/methylCC.html

License

CC BY 4.0

Recipe

/bioconductor-methylcc/meta.yaml

A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).

package bioconductor-methylcc

Versions

1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-bsseq >=1.28.0,<1.29.0

• bioconductor-bumphunter >=1.34.0,<1.35.0

• bioconductor-flowsorted.blood.450k >=1.30.0,<1.31.0

• bioconductor-genefilter >=1.74.0,<1.75.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-minfi >=1.38.0,<1.39.0

• bioconductor-plyranges >=1.12.0,<1.13.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-magrittr

• r-quadprog

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylcc

and update with:

conda update bioconductor-methylcc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylcc:<tag>

(see bioconductor-methylcc/tags for valid values for <tag>)

Download stats

Link to this page

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