- recipe bioconductor-methylgsa
Gene Set Analysis Using the Outcome of Differential Methylation
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/methylGSA.html
- License
GPL-2
- Recipe
The main functions for methylGSA are methylglm and methylRRA. methylGSA implements logistic regression adjusting number of probes as a covariate. methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed help information, please see the vignette.
- package bioconductor-methylgsa¶
-
- Versions
1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.1-0
,1.4.0-0
,1.2.3-0
,1.0.2-0
- Depends
bioconductor-annotationdbi
>=1.54.0,<1.55.0
bioconductor-biocparallel
>=1.26.0,<1.27.0
bioconductor-clusterprofiler
>=4.0.0,<4.1.0
bioconductor-go.db
>=3.13.0,<3.14.0
bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
>=0.6.0,<0.7.0
bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19
>=0.6.0,<0.7.0
bioconductor-missmethyl
>=1.26.0,<1.27.0
bioconductor-org.hs.eg.db
>=3.13.0,<3.14.0
bioconductor-reactome.db
>=1.76.0,<1.77.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methylgsa
and update with:
conda update bioconductor-methylgsa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylgsa:<tag>
(see bioconductor-methylgsa/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylgsa/README.html)