bioconductor-methylkit¶
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files only.
| Home | http://bioconductor.org/packages/3.6/bioc/html/methylKit.html |
| Versions | 0.99.2, 1.0.0, 1.2.4, 1.4.0 |
| License | Artistic-2.0 |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-methylkit |
| Links | biotools: methylkit |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methylkit
and update with:
conda update bioconductor-methylkit
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-methylkit.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/bioconductor-methylkit/README.html)
