recipe bioconductor-methylseqdata

Collection of Public DNA Methylation Sequencing Datasets

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/MethylSeqData.html

License:

CC0

Recipe:

/bioconductor-methylseqdata/meta.yaml

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

package bioconductor-methylseqdata

Versions:

1.8.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-methylseqdata

and update with:

conda update bioconductor-methylseqdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylseqdata:<tag>

(see bioconductor-methylseqdata/tags for valid values for <tag>)

Download stats

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