- recipe bioconductor-methylseqdata
Collection of Public DNA Methylation Sequencing Datasets
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/MethylSeqData.html
- License:
CC0
- Recipe:
Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.
- package bioconductor-methylseqdata¶
-
- Versions:
1.8.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-data-packages
>=20221108
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-hdf5array
>=1.26.0,<1.27.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rhdf5
>=2.42.0,<2.43.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-methylseqdata
and update with:
conda update bioconductor-methylseqdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylseqdata:<tag>
(see bioconductor-methylseqdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylseqdata/README.html)