- recipe bioconductor-methylseqdata
Collection of Public DNA Methylation Sequencing Datasets
- Homepage
https://bioconductor.org/packages/3.14/data/experiment/html/MethylSeqData.html
- License
CC0
- Recipe
Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.
- package bioconductor-methylseqdata¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends
bioconductor-experimenthub
>=2.2.0,<2.3.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methylseqdata
and update with:
conda update bioconductor-methylseqdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylseqdata:<tag>
(see bioconductor-methylseqdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylseqdata/README.html)