recipe bioconductor-methylseqdata

Collection of Public DNA Methylation Sequencing Datasets

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/MethylSeqData.html

License

CC0

Recipe

/bioconductor-methylseqdata/meta.yaml

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

package bioconductor-methylseqdata

Versions

1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-hdf5array >=1.22.0,<1.23.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rhdf5 >=2.38.0,<2.39.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylseqdata

and update with:

conda update bioconductor-methylseqdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylseqdata:<tag>

(see bioconductor-methylseqdata/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylseqdata/README.html)