recipe bioconductor-methylsig

MethylSig: Differential Methylation Testing for WGBS and RRBS Data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/methylSig.html

License

GPL-3

Recipe

/bioconductor-methylsig/meta.yaml

MethylSig is a package for testing for differentially methylated cytosines (DMCs) or regions (DMRs) in whole-genome bisulfite sequencing (WGBS) or reduced representation bisulfite sequencing (RRBS) experiments. MethylSig uses a beta binomial model to test for significant differences between groups of samples. Several options exist for either site-specific or sliding window tests, and variance estimation.

package bioconductor-methylsig

Versions

1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-bsseq >=1.28.0,<1.29.0

• bioconductor-delayedarray >=0.18.0,<0.19.0

• bioconductor-delayedmatrixstats >=1.14.0,<1.15.0

• bioconductor-dss >=2.40.0,<2.41.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylsig

and update with:

conda update bioconductor-methylsig

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylsig:<tag>

(see bioconductor-methylsig/tags for valid values for <tag>)

Download stats

Link to this page

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