- recipe bioconductor-methylsig
MethylSig: Differential Methylation Testing for WGBS and RRBS Data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/methylSig.html
- License:
GPL-3
- Recipe:
MethylSig is a package for testing for differentially methylated cytosines (DMCs) or regions (DMRs) in whole-genome bisulfite sequencing (WGBS) or reduced representation bisulfite sequencing (RRBS) experiments. MethylSig uses a beta binomial model to test for significant differences between groups of samples. Several options exist for either site-specific or sliding window tests, and variance estimation.
- package bioconductor-methylsig¶
-
- Versions:
1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-bsseq
>=1.30.0,<1.31.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-delayedmatrixstats
>=1.16.0,<1.17.0
bioconductor-dss
>=2.42.0,<2.43.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-methylsig
and update with:
conda update bioconductor-methylsig
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylsig:<tag>
(see bioconductor-methylsig/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylsig/README.html)