recipe bioconductor-methylsig

MethylSig: Differential Methylation Testing for WGBS and RRBS Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/methylSig.html

License

GPL-3

Recipe

/bioconductor-methylsig/meta.yaml

MethylSig is a package for testing for differentially methylated cytosines (DMCs) or regions (DMRs) in whole-genome bisulfite sequencing (WGBS) or reduced representation bisulfite sequencing (RRBS) experiments. MethylSig uses a beta binomial model to test for significant differences between groups of samples. Several options exist for either site-specific or sliding window tests, and variance estimation.

package bioconductor-methylsig

Versions

1.0.0-0

Depends

• bioconductor-bsseq >=1.24.0,<1.25.0

• bioconductor-delayedarray >=0.14.0,<0.15.0

• bioconductor-delayedmatrixstats >=1.10.0,<1.11.0

• bioconductor-dss >=2.36.0,<2.37.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylsig

and update with:

conda update bioconductor-methylsig

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylsig:<tag>

(see bioconductor-methylsig/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylsig/README.html)