recipe bioconductor-methylsig

MethylSig: Differential Methylation Testing for WGBS and RRBS Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/methylSig.html

License

GPL-3

Recipe

/bioconductor-methylsig/meta.yaml

MethylSig is a package for testing for differentially methylated cytosines (DMCs) or regions (DMRs) in whole-genome bisulfite sequencing (WGBS) or reduced representation bisulfite sequencing (RRBS) experiments. MethylSig uses a beta binomial model to test for significant differences between groups of samples. Several options exist for either site-specific or sliding window tests, and variance estimation.

package bioconductor-methylsig

(downloads) docker_bioconductor-methylsig

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylsig

and update with:

conda update bioconductor-methylsig

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylsig:<tag>

(see bioconductor-methylsig/tags for valid values for <tag>)