recipe bioconductor-metmashr

Metabolite Mashing with R

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/MetMashR.html

License:

GPL-3

Recipe:

/bioconductor-metmashr/meta.yaml

A package to merge, filter sort, organise and otherwise mash together metabolite annotation tables. Metabolite annotations can be imported from multiple sources (software) and combined using workflow steps based on S4 class templates derived from the `struct` package. Other modular workflow steps such as filtering, merging, splitting, normalisation and rest-api queries are included.

package bioconductor-metmashr

(downloads) docker_bioconductor-metmashr

versions:

1.0.0-0

depends bioconductor-struct:

>=1.18.0,<1.19.0

depends r-base:

>=4.4,<4.5.0a0

depends r-cowplot:

depends r-dplyr:

depends r-ggplot2:

depends r-ggthemes:

depends r-httr:

depends r-rlang:

depends r-scales:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-metmashr

and update with::

   mamba update bioconductor-metmashr

To create a new environment, run:

mamba create --name myenvname bioconductor-metmashr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-metmashr:<tag>

(see `bioconductor-metmashr/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metmashr/README.html)