recipe bioconductor-mfuzz

Soft clustering of omics time series data

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/Mfuzz.html

License:

GPL-2

Recipe:

/bioconductor-mfuzz/meta.yaml

The Mfuzz package implements noise-robust soft clustering of omics time-series data, including transcriptomic, proteomic or metabolomic data. It is based on the use of c-means clustering. For convenience, it includes a graphical user interface.

package bioconductor-mfuzz

(downloads) docker_bioconductor-mfuzz

versions:
2.66.0-0,  2.62.0-0,  2.60.0-0,  2.58.0-0,  2.54.0-0,  2.52.0-0,  2.50.0-1,  2.50.0-0,  2.48.0-0, 

2.66.0-0,  2.62.0-0,  2.60.0-0,  2.58.0-0,  2.54.0-0,  2.52.0-0,  2.50.0-1,  2.50.0-0,  2.48.0-0,  2.46.0-0,  2.44.0-1,  2.42.0-0

depends bioconductor-biobase:

>=2.66.0,<2.67.0

depends bioconductor-tkwidgets:

>=1.84.0,<1.85.0

depends r-base:

>=4.4,<4.5.0a0

depends r-e1071:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mfuzz

and update with::

   mamba update bioconductor-mfuzz

To create a new environment, run:

mamba create --name myenvname bioconductor-mfuzz

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mfuzz:<tag>

(see `bioconductor-mfuzz/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mfuzz/README.html)