recipe bioconductor-mia

Microbiome analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/mia.html

License:

Artistic-2.0 | file LICENSE

Recipe:

/bioconductor-mia/meta.yaml

mia implements tools for microbiome analysis based on the SummarizedExperiment, SingleCellExperiment and TreeSummarizedExperiment infrastructure. Data wrangling and analysis in the context of taxonomic data is the main scope. Additional functions for common task are implemented such as community indices calculation and summarization.

package bioconductor-mia

Versions:

1.6.0-0,  1.2.2-0,  1.0.2-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-decipher >=2.26.0,<2.27.0

• bioconductor-decontam >=1.18.0,<1.19.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-dirichletmultinomial >=1.40.0,<1.41.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-scater >=1.26.0,<1.27.0

• bioconductor-scuttle >=1.8.0,<1.9.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-treesummarizedexperiment >=2.6.0,<2.7.0

• r-ape

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-mass

• r-rlang

• r-tibble

• r-tidyr

• r-vegan

Required By:

• bioconductor-miaviz

• bioconductor-curatedmetagenomicdata

• bioconductor-ancombc

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mia

and update with:

conda update bioconductor-mia

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mia:<tag>

(see bioconductor-mia/tags for valid values for <tag>)

Download stats

Link to this page

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